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Jurgen Nijkamp

2012
Nijkamp, J. F., M. A. van den Broek, J. - M. A. Geertman, M. J. T. Reinders, J. - M. G. Daran, and D. de Ridder, "De novo detection of copy number variation by co-assembly", Bioinformatics, vol. 28, issue 24, pp. 3195-3202, 2012. Abstract
Nijkamp, J. F., M. A. van den Broek, E. Datema, S. de Kok, L. Bosman, M. A. H. Luttik, P. A. S. Daran-Lapujade, W. Vongsangnak, J. Nielsen, W. H. M. Heijne, et al., "De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology", Microbial Cell Factories, vol. 11, issue 36, 2012. Abstract
Gritsenko, A. A., J. F. Nijkamp, M. J. T. Reinders, and D. de Ridder, "GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies", Bioinformatics, vol. 28, issue 11, pp. 1429-1437, 2012. Abstract
de Kok, S., J. F. Nijkamp, B. Oud, F. Roque, D. de Ridder, J. - M. G. Daran, J. T. Pronk, and A. J. A. van Maris, "Laboratory evolution of new lactate transporter genes in a jen1Δ mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole-genome resequencing and transcriptome analysis", FEMS Yeast Research, vol. 12, issue 3, pp. 359-374, 2012. Abstract
2011
Gritsenko, A. A., Scaffolding of next-generation sequencing assemblies using diverse information sources, , vol. M.Sc., Delft, Delft University of Technology, pp. 26+29, 08/2011.
2010
Nijkamp, J. F., W. Winterbach, M. A. van den Broek, J. - M. G. Daran, M. J. T. Reinders, and D. de Ridder, "Integrating genome assemblies with MAIA", Bioinformatics, vol. 26, issue 18, pp. i433-i439, 2010. Abstract
van den Berg, B., J. F. Nijkamp, M. J. T. Reinders, L. Wu, H. J. Pel, J. A. Roubos, and D. de Ridder, "Sequence-based prediction of protein secretion success in Aspergillus niger", Pattern Recognition in Bioinformatics (PRIB), vol. 6282, Nijmegen, The Netherlands, Springer, pp. 3-14, 2010.
2008
Nijkamp, J. F., "Prediction of overexpression success of enzymes in Aspergillus niger using sequence-based features", M.Sc. Thesis: Delft University of Technology, pp. 11 pages, October 3, 2008.